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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
4
ATAC-seq
2
Capture-C
1
DNase-seq
1
Hi-C
1
pCHi-C
Assay category
22
DNA binding
5
DNA accessibility
1
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
control
6
transcription factor
5
broad histone mark
5
narrow histone mark
Date released
15
December, 2017
7
August, 2017
4
February, 2023
2
August, 2021
2
October, 2019
1
February, 2021
Available data
876
bam
784
bigWig
572
fastq
538
bed narrowPeak
372
bigBed narrowPeak
254
tsv
60
bed broadPeak
60
bigBed broadPeak
60
tagAlign
31
bed bed3+
9
bedpe bed3+
7
bed bedgraph
6
bed bed3
6
hic
4
txt
3
tar
2
ibed
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
vcf
Organism
31
Homo sapiens
Biosample type
tissue
primary cell
25
in vitro differentiated cells
3
cell line
3
stem cell
Organ
13
connective tissue
3
embryo
2
pancreas
1
liver
Project
31
AMP
Genome assembly (visualization)
31
hg19
24
GRCh38
Lab
29
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
Audit category:
10
inconsistent control read length
1
inconsistent assembly
biosample_type!
tissue
primary cell
BIOSAMPLE
ASSAY
31 results
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ChIP-seq
ATAC-seq
Capture-C
DNase-seq
Hi-C
pCHi-C
in vitro differentiated cells
adipocyte
7
1
1
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
+ See 3 more…
cell line
Panc1
1
1
HepG2
1
stem cell
hESC
3
See all biosamples
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