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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
Hi-C
Assay category
6
3D chromatin structure
Date released
2
March, 2020
2
October, 2019
1
August, 2021
1
November, 2019
Available data
876
bam
784
bigWig
572
fastq
538
bed narrowPeak
372
bigBed narrowPeak
254
tsv
60
bed broadPeak
60
bigBed broadPeak
60
tagAlign
31
bed bed3+
9
bedpe bed3+
7
bed bedgraph
6
bed bed3
6
hic
4
txt
3
tar
2
ibed
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
vcf
Organism
6
Homo sapiens
Biosample type
tissue
primary cell
4
in vitro differentiated cells
2
cell line
Organ
1
epithelium
1
liver
1
pancreas
Project
6
AMP
Genome assembly (visualization)
6
hg19
Lab
5
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
5
inconsistent ontology term
biosample_type!
tissue
primary cell
BIOSAMPLE
ASSAY
6 results
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Hi-C
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
HepG2
1
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