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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
6
total RNA-seq
4
ATAC-seq
3
Hi-C
2
DNase-seq
Assay category
23
DNA binding
6
DNA accessibility
6
Transcription
3
3D chromatin structure
Target of assay
9
control
7
histone
7
histone modification
7
recombinant protein
7
transcription factor
4
broad histone mark
3
narrow histone mark
Date released
315
November, 2017
153
May, 2021
122
February, 2021
86
August, 2021
68
August, 2017
61
November, 2018
46
December, 2017
39
February, 2018
38
October, 2019
28
December, 2018
January, 2019
23
March, 2020
22
February, 2023
21
November, 2019
6
January, 2018
6
November, 2020
4
March, 2023
2
December, 2019
1
August, 2018
1
May, 2020
1
October, 2022
Available data
33
bam
24
bigWig
17
bed narrowPeak
10
bigBed narrowPeak
6
tsv
2
bed bed3+
2
bedpe bed3+
2
hic
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
38
Homo sapiens
Biosample type
tissue
primary cell
30
cell line
8
in vitro differentiated cells
Organ
15
kidney
15
pancreas
2
connective tissue
2
epithelium
Project
38
AMP
Genome assembly (visualization)
28
hg19
24
GRCh38
Lab
38
AMP-T2D consortium
Audit category:
19
inconsistent ontology term
Audit category:
1
inconsistent assembly
biosample_type!
tissue
primary cell
month_released!
January, 2019
BIOSAMPLE
ASSAY
38 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
DNase-seq
cell line
Panc1
13
1
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
glomerular visceral epithelial cell
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
1
1
cardiomyocytes (cardiac muscle cell)
1
1
1
adipocyte
2
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