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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
90
ChIP-seq
88
total RNA-seq
21
ATAC-seq
Assay category
90
DNA binding
88
Transcription
21
DNA accessibility
Target of assay
48
histone
48
histone modification
27
transcription factor
26
narrow histone mark
22
broad histone mark
15
control
7
RNA binding protein
1
chromatin remodeller
Date released
315
November, 2017
153
May, 2021
122
February, 2021
86
August, 2021
68
August, 2017
61
November, 2018
46
December, 2017
39
February, 2018
38
October, 2019
28
December, 2018
23
January, 2019
23
March, 2020
22
February, 2023
21
November, 2019
6
January, 2018
6
November, 2020
4
March, 2023
2
December, 2019
1
August, 2018
1
May, 2020
1
October, 2022
Available data
136
bam
130
bigWig
83
tsv
46
fastq
42
bed narrowPeak
15
bed bed3+
14
bigBed narrowPeak
6
tagAlign
Organism
199
Homo sapiens
Biosample type
primary cell
175
in vitro differentiated cells
tissue
21
cell line
3
stem cell
Organ
45
epithelium
24
pancreas
15
embryo
15
liver
1
connective tissue
1
heart
Project
198
AMP
1
T1D
Genome assembly (visualization)
135
hg19
130
GRCh38
Lab
152
AMP-T2D consortium
47
Kyle Gaulton, UCSD
Audit category:
93
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
biosample_type!
tissue
primary cell
BIOSAMPLE
ASSAY
199 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
in vitro differentiated cells
cardiomyocytes
3
59
embryonic stem cell
37
5
5
hepatocyte
15
induced pluripotent stem cell
9
pancreatic endoderm
9
+ See 16 more…
cell line
EndoC_BH1
1
4
16
stem cell
hESC
3
See all biosamples
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