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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
6
total RNA-seq
4
ATAC-seq
3
Hi-C
2
DNase-seq
Assay category
16
DNA binding
6
DNA accessibility
6
Transcription
3
3D chromatin structure
Target of assay
9
control
histone
7
histone modification
7
recombinant protein
7
transcription factor
4
broad histone mark
3
narrow histone mark
Date released
300
November, 2017
131
May, 2021
122
February, 2021
69
August, 2021
61
November, 2018
31
August, 2017
31
October, 2019
28
December, 2018
23
February, 2018
22
February, 2023
22
January, 2019
22
March, 2020
20
December, 2017
11
November, 2019
6
January, 2018
6
November, 2020
4
March, 2023
2
December, 2019
1
August, 2018
1
May, 2020
1
October, 2022
Available data
26
bam
18
bigWig
11
bed narrowPeak
6
tsv
4
bigBed narrowPeak
2
bed bed3+
2
bedpe bed3+
2
hic
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
31
Homo sapiens
Biosample type
tissue
23
cell line
primary cell
8
in vitro differentiated cells
Organ
15
kidney
8
pancreas
2
connective tissue
2
epithelium
Project
31
AMP
Genome assembly (visualization)
22
hg19
18
GRCh38
Lab
31
AMP-T2D consortium
Audit category:
19
inconsistent ontology term
Audit category:
1
inconsistent assembly
biosample_type!
tissue
primary cell
target.investigated_as!
histone
BIOSAMPLE
ASSAY
31 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
DNase-seq
cell line
Panc1
6
1
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
glomerular visceral epithelial cell
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
1
1
cardiomyocytes (cardiac muscle cell)
1
1
1
adipocyte
2
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