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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
ChIP-seq
3
MeRIP-seq
Assay category
118
DNA binding
Target of assay
410
transcription factor
152
histone
152
histone modification
121
control
89
recombinant protein
76
RNA binding protein
76
broad histone mark
75
narrow histone mark
33
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
56
November, 2017
11
August, 2021
9
December, 2017
9
October, 2019
8
August, 2017
8
February, 2018
6
May, 2021
3
February, 2021
3
January, 2019
3
November, 2018
3
November, 2020
2
November, 2019
Available data
107
bam
85
fastq
14
tagAlign
13
bigWig
6
bed bed3+
Organism
121
Homo sapiens
Biosample type
tissue
83
cell line
37
in vitro differentiated cells
primary cell
1
stem cell
Organ
61
liver
12
pancreas
9
epithelium
8
connective tissue
7
embryo
6
blood
6
bodily fluid
3
kidney
2
artery
2
blood vessel
2
heart
2
vasculature
Project
121
AMP
Genome assembly (visualization)
19
hg19
6
GRCh38
Lab
109
AMP-T2D consortium
5
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
10
inconsistent ontology term
biosample_type!
tissue
primary cell
BIOSAMPLE
ASSAY
121 results
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Clear Filters
ChIP-seq
MeRIP-seq
cell line
HepG2
60
GM12878
6
Panc1
6
EndoC_BH1
2
3
smooth muscle cell of the coronary artery
2
+ See 4 more…
in vitro differentiated cells
adipocyte
8
neural progenitor cell
7
embryonic stem cell
6
pancreatic endoderm
5
Hepatic endoderm
2
+ See 7 more…
stem cell
hESC
1
See all biosamples
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