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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
3
MeRIP-seq
Assay category
114
DNA binding
Target of assay
399
transcription factor
149
histone
149
histone modification
117
control
89
recombinant protein
75
RNA binding protein
75
broad histone mark
73
narrow histone mark
33
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
56
November, 2017
9
December, 2017
9
October, 2019
8
August, 2017
8
February, 2018
7
August, 2021
6
May, 2021
3
February, 2021
3
January, 2019
3
November, 2018
3
November, 2020
2
November, 2019
Available data
107
bam
85
fastq
14
tagAlign
13
bigWig
6
bed bed3+
Organism
117
Homo sapiens
Biosample type
tissue
79
cell line
37
in vitro differentiated cells
primary cell
1
stem cell
Organ
57
liver
12
pancreas
9
epithelium
8
connective tissue
7
embryo
6
blood
6
bodily fluid
3
kidney
2
artery
2
blood vessel
2
heart
2
vasculature
Project
117
AMP
Genome assembly (visualization)
19
hg19
6
GRCh38
Lab
109
AMP-T2D consortium
5
Kyle Gaulton, UCSD
Bing Ren, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
10
inconsistent ontology term
biosample_type!
tissue
primary cell
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
117 results
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Clear Filters
ChIP-seq
MeRIP-seq
cell line
HepG2
56
GM12878
6
Panc1
6
EndoC_BH1
2
3
smooth muscle cell of the coronary artery
2
+ See 4 more…
in vitro differentiated cells
adipocyte
8
neural progenitor cell
7
embryonic stem cell
6
pancreatic endoderm
5
Hepatic endoderm
2
+ See 7 more…
stem cell
hESC
1
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