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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
ChIP-seq
Assay category
149
DNA binding
Target of assay
399
transcription factor
149
histone
149
histone modification
117
control
89
recombinant protein
75
RNA binding protein
75
broad histone mark
73
narrow histone mark
33
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
37
August, 2017
26
December, 2017
22
May, 2021
16
February, 2018
15
November, 2017
14
August, 2021
10
November, 2019
7
October, 2019
1
January, 2019
1
March, 2020
Available data
116
bam
114
bigWig
112
bed narrowPeak
83
fastq
37
tagAlign
32
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
10
bed bed3+
Organism
149
Homo sapiens
Biosample type
tissue
primary cell
112
in vitro differentiated cells
35
cell line
2
stem cell
Organ
37
connective tissue
27
epithelium
27
liver
20
pancreas
12
embryo
1
blood
1
bodily fluid
Project
147
AMP
2
T1D
Genome assembly (visualization)
113
hg19
112
GRCh38
Lab
129
AMP-T2D consortium
20
Kyle Gaulton, UCSD
Bing Ren, UCSD
Audit category:
14
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
20
inconsistent control read length
biosample_type!
tissue
primary cell
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
149 results
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ChIP-seq
in vitro differentiated cells
adipocyte
37
embryonic stem cell
22
neural progenitor cell
14
hepatocyte
12
pancreatic endoderm
10
+ See 7 more…
cell line
HepG2
15
EndoC_BH1
12
Panc1
7
GM12878
1
stem cell
hESC
2
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