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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
ChIP-seq
Assay category
132
DNA binding
Target of assay
398
transcription factor
132
histone
132
histone modification
116
control
89
recombinant protein
71
RNA binding protein
66
broad histone mark
65
narrow histone mark
33
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
37
August, 2017
26
December, 2017
17
August, 2021
16
February, 2018
15
November, 2017
10
November, 2019
7
October, 2019
2
May, 2021
1
January, 2019
1
March, 2020
Available data
117
bigWig
116
bam
115
bed narrowPeak
83
fastq
37
tagAlign
32
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
10
bed bed3+
Organism
132
Homo sapiens
Biosample type
tissue
primary cell
92
in vitro differentiated cells
38
cell line
2
stem cell
Organ
37
connective tissue
30
liver
27
epithelium
20
pancreas
12
embryo
1
blood
1
bodily fluid
Project
130
AMP
2
T1D
Genome assembly (visualization)
116
hg19
112
GRCh38
Lab
129
AMP-T2D consortium
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
Audit category:
14
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
20
inconsistent control read length
biosample_type!
tissue
primary cell
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
132 results
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ChIP-seq
in vitro differentiated cells
adipocyte
37
neural progenitor cell
14
hepatocyte
12
pancreatic endoderm
10
definitive endodermal cell
4
+ See 7 more…
cell line
HepG2
18
EndoC_BH1
12
Panc1
7
GM12878
1
stem cell
hESC
2
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