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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
9
total RNA-seq
2
ATAC-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
RRBS
1
whole genome sequencing assay
Assay category
54
DNA binding
9
Transcription
2
3D chromatin structure
2
DNA accessibility
1
DNA methylation
1
DNA sequencing
Target of assay
49
control
5
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
47
November, 2017
18
August, 2021
2
February, 2021
1
December, 2017
1
December, 2018
1
July, 2019
1
May, 2020
1
November, 2018
1
October, 2019
Available data
393
bam
382
fastq
bigWig
328
bed narrowPeak
309
bigBed narrowPeak
60
bed broadPeak
60
bigBed broadPeak
20
tsv
16
tagAlign
7
bed bed3+
3
tar
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
hdf5
1
hic
1
vcf
Organism
73
Homo sapiens
Biosample type
tissue
69
cell line
3
primary cell
1
in vitro differentiated cells
Organ
208
epithelium
191
pancreas
73
liver
47
connective tissue
18
vasculature
17
blood vessel
15
kidney
14
blood
14
bodily fluid
13
heart
10
artery
8
embryo
7
vein
3
musculature of body
2
eye
1
adipose tissue
1
bone element
1
bone marrow
1
brain
1
mammary gland
Project
73
AMP
Genome assembly (visualization)
5
hg19
2
GRCh38
Lab
56
AMP-T2D consortium
17
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
biosample_type!
tissue
stem cell
files.file_type!
bigWig
BIOSAMPLE
ASSAY
73 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
STARR-seq
pCHi-C
RRBS
whole genome sequencing assay
cell line
HepG2
52
9
1
2
2
2
1
primary cell
hepatocyte
1
1
Liver fetal (hepatocyte)
1
in vitro differentiated cells
hepatocyte
1
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