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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
914
ChIP-seq
488
total RNA-seq
265
ATAC-seq
189
single cell RNA-seq
56
snATAC-seq
48
WGBS
28
DNase-seq
28
pCHi-C
14
Hi-C
10
RRBS
6
MeRIP-seq
5
STARR-seq
4
Capture-C
4
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
28
DNA accessibility
Date released
24
June, 2019
October, 2019
3
August, 2017
1
November, 2020
Available data
28
bam
28
bed narrowPeak
28
bigBed narrowPeak
28
bigWig
27
bed broadPeak
27
bigBed broadPeak
25
bed bed3+
2
fastq
Organism
28
Homo sapiens
Biosample type
tissue
27
primary cell
1
in vitro differentiated cells
Organ
14
epithelium
10
kidney
7
connective tissue
5
brain
4
vasculature
3
heart
2
blood vessel
2
liver
1
eye
1
musculature of body
Project
28
AMP
Genome assembly (visualization)
26
GRCh38
21
hg19
Lab
28
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
biosample_type!
tissue
stem cell
month_released!
October, 2019
BIOSAMPLE
ASSAY
28 results
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DNase-seq
primary cell
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
+ See 17 more…
in vitro differentiated cells
adipocyte
1
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