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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
total RNA-seq
11
ChIP-seq
8
ATAC-seq
3
DNase-seq
1
RRBS
1
pCHi-C
1
small RNA-seq
Assay category
59
Transcription
11
DNA accessibility
11
DNA binding
1
DNA methylation
Target of assay
5
transcription factor
4
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
Date released
66
February, 2021
8
June, 2019
7
July, 2019
1
August, 2018
1
May, 2021
Available data
81
bam
69
bigWig
59
tsv
18
bed narrowPeak
6
bigBed narrowPeak
6
tagAlign
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
fastq
Organism
83
Homo sapiens
Biosample type
tissue
66
cell line
15
primary cell
2
in vitro differentiated cells
Organ
509
epithelium
441
pancreas
430
liver
136
connective tissue
103
vasculature
97
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
55
kidney
37
embryo
22
vein
21
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
83
AMP
Genome assembly (visualization)
77
GRCh38
77
hg19
Lab
83
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
biosample_type!
tissue
stem cell
BIOSAMPLE
ASSAY
83 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RRBS
pCHi-C
small RNA-seq
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
cardiac fibroblast
5
3
1
mesenchymal stem cell of adipose
1
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
endothelial cell of coronary artery
1
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in vitro differentiated cells
cardiac fibroblast
1
white fat cell
1
See all biosamples
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