Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
ChIP-seq
20
total RNA-seq
3
Hi-C
3
pCHi-C
2
ATAC-seq
2
DNase-seq
2
STARR-seq
1
RRBS
1
WGBS
1
small RNA-seq
1
whole genome sequencing assay
Assay category
397
DNA binding
21
Transcription
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
1
DNA sequencing
Target of assay
299
transcription factor
82
recombinant protein
62
control
56
RNA binding protein
33
histone
33
histone modification
21
chromatin remodeller
17
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
46
November, 2018
35
August, 2021
15
December, 2017
5
December, 2019
5
January, 2019
4
July, 2019
2
February, 2021
2
June, 2019
1
August, 2018
1
December, 2018
1
May, 2020
1
October, 2019
Available data
395
bam
383
fastq
359
bigWig
328
bed narrowPeak
309
bigBed narrowPeak
60
bed broadPeak
60
bigBed broadPeak
22
tsv
16
tagAlign
7
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
1
bed bed3
1
hdf5
1
hic
1
vcf
Organism
433
Homo sapiens
Biosample type
tissue
401
cell line
16
in vitro differentiated cells
16
primary cell
Organ
509
epithelium
441
pancreas
430
liver
136
connective tissue
103
vasculature
97
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
55
kidney
37
embryo
22
vein
21
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
433
AMP
Genome assembly (visualization)
359
hg19
295
GRCh38
Lab
402
AMP-T2D consortium
31
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
biosample_type!
tissue
stem cell
BIOSAMPLE
ASSAY
433 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
Hi-C
pCHi-C
ATAC-seq
DNase-seq
STARR-seq
RRBS
WGBS
small RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
2
2
1
2
1
1
in vitro differentiated cells
hepatocyte
15
white fat cell
1
primary cell
hepatocyte
4
5
1
1
mesenchymal stem cell of adipose
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
Download