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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
160
ATAC-seq
115
total RNA-seq
108
ChIP-seq
89
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
pCHi-C
18
Hi-C
10
RRBS
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
DNase-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
108
DNA binding
Target of assay
70
histone
70
histone modification
42
broad histone mark
28
narrow histone mark
24
transcription factor
14
control
6
RNA binding protein
Date released
74
May, 2021
19
August, 2021
14
August, 2017
1
November, 2017
Available data
bam
775
bigWig
730
bed narrowPeak
637
fastq
424
bigBed narrowPeak
160
tagAlign
79
bed broadPeak
79
bigBed broadPeak
25
bed bed3+
3
tar
Organism
108
Homo sapiens
Biosample type
tissue
52
in vitro differentiated cells
37
primary cell
19
cell line
Organ
19
liver
14
connective tissue
Project
108
AMP
Genome assembly (visualization)
47
hg19
Lab
70
Kyle Gaulton, UCSD
20
AMP-T2D consortium
18
Bing Ren, UCSD
biosample_type!
tissue
files.file_type!
bam
BIOSAMPLE
ASSAY
108 results
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Clear Filters
ChIP-seq
in vitro differentiated cells
embryonic stem cell
37
adipocyte
14
neural progenitor cell
1
primary cell
CD8-positive, alpha-beta T cell
33
naive thymus-derived CD4-positive, alpha-beta T cell
2
monocyte
1
neutrophil
1
cell line
HepG2
19
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