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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
16
pCHi-C
8
snATAC-seq
7
total RNA-seq
5
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
70
DNA binding
13
DNA accessibility
7
Transcription
Target of assay
50
histone
50
histone modification
30
broad histone mark
20
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
98
May, 2021
8
January, 2021
5
February, 2023
Available data
220
bigWig
bam
114
bed narrowPeak
96
tsv
84
tagAlign
2
bed bed3+
Organism
111
Homo sapiens
Biosample type
59
primary cell
47
in vitro differentiated cells
tissue
5
cell line
Organ
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
82
AMP
29
T1D
Genome assembly (visualization)
40
hg19
Lab
324
Klaus Kaestner, Upenn
182
AMP-T2D consortium
111
Kyle Gaulton, UCSD
34
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
6
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
1
ITG
Audit category:
1
inconsistent ontology term
biosample_type!
tissue
files.file_type!
bam
BIOSAMPLE
ASSAY
111 results
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ChIP-seq
pCHi-C
snATAC-seq
total RNA-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
CD8-positive, alpha-beta T cell
33
1
2
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 11 more…
in vitro differentiated cells
embryonic stem cell
37
5
5
cell line
EndoC_BH1
3
2
See all biosamples
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