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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
964
ChIP-seq
496
total RNA-seq
271
ATAC-seq
189
single cell RNA-seq
56
snATAC-seq
47
WGBS
34
DNase-seq
29
pCHi-C
8
Hi-C
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
8
3D chromatin structure
Date released
4
July, 2019
2
October, 2019
1
December, 2018
1
March, 2023
Available data
12
hic
bedpe bed3+
5
bed bed3+
5
bigWig
5
hdf5
3
cool
1
fastq
Organism
8
Homo sapiens
Biosample type
6
primary cell
tissue
2
cell line
Organ
3
blood vessel
3
brain
3
epithelium
3
vasculature
2
liver
1
connective tissue
1
pancreas
1
vein
Project
7
AMP
1
ITG
Genome assembly (visualization)
6
hg19
2
GRCh38
Lab
7
AMP-T2D consortium
1
ITG
Audit category:
1
audit script error
Audit category:
1
inconsistent assembly
biosample_type!
tissue
files.file_type!
bed bedMethyl
bedpe bed3+
BIOSAMPLE
ASSAY
8 results
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Hi-C
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
endothelial cell of hepatic sinusoid
1
+ See 1 more…
cell line
HepG2
1
Panc1
1
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