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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
335
ChIP-seq
19
total RNA-seq
3
Hi-C
2
ATAC-seq
2
DNase-seq
2
STARR-seq
2
pCHi-C
1
whole genome sequencing assay
Assay category
335
DNA binding
19
Transcription
4
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
299
transcription factor
82
recombinant protein
control
56
RNA binding protein
33
histone
33
histone modification
21
chromatin remodeller
17
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
259
November, 2017
45
November, 2018
30
August, 2021
14
December, 2017
5
December, 2019
5
January, 2019
2
February, 2021
2
June, 2019
1
December, 2018
1
July, 2019
1
May, 2020
1
October, 2019
Available data
344
bigWig
335
bam
328
bed narrowPeak
325
fastq
309
bigBed narrowPeak
60
bed broadPeak
60
bigBed broadPeak
20
tsv
14
tagAlign
7
bed bed3+
3
tar
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
hdf5
1
hic
1
vcf
Organism
366
Homo sapiens
Biosample type
340
cell line
tissue
14
in vitro differentiated cells
12
primary cell
Organ
473
epithelium
417
pancreas
366
liver
125
connective tissue
96
vasculature
92
blood vessel
75
heart
66
artery
63
blood
63
bodily fluid
46
kidney
30
embryo
20
vein
14
brain
11
musculature of body
3
adipose tissue
3
eye
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
366
AMP
Genome assembly (visualization)
343
hg19
292
GRCh38
Lab
339
AMP-T2D consortium
27
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
biosample_type!
tissue
files.file_type!
bed bedMethyl
target.investigated_as!
control
BIOSAMPLE
ASSAY
366 results
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ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
DNase-seq
STARR-seq
pCHi-C
whole genome sequencing assay
cell line
HepG2
318
14
2
1
2
2
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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