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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
23
ChIP-seq
8
ATAC-seq
4
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
54
Transcription
23
DNA binding
9
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
13
histone
13
histone modification
7
broad histone mark
6
control
6
narrow histone mark
4
transcription factor
Date released
66
February, 2021
17
October, 2019
5
July, 2019
2
November, 2017
1
March, 2020
Available data
98
bam
85
bigWig
54
tsv
33
bed narrowPeak
21
bigBed narrowPeak
12
bed broadPeak
bigBed broadPeak
8
bed bed3+
6
fastq
6
tagAlign
2
hdf5
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
91
Homo sapiens
Biosample type
tissue
66
cell line
25
primary cell
Organ
417
epithelium
370
liver
366
pancreas
126
connective tissue
91
vasculature
89
blood vessel
77
heart
69
blood
69
bodily fluid
68
artery
45
kidney
37
embryo
18
vein
13
musculature of body
7
brain
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
91
AMP
Genome assembly (visualization)
84
hg19
76
GRCh38
Lab
91
AMP-T2D consortium
Audit category:
1
audit script error
biosample_type!
tissue
files.file_type!
bigBed broadPeak
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
91 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
FAIRE-seq
RRBS
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
15
2
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
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