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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
885
ChIP-seq
496
total RNA-seq
268
ATAC-seq
189
single cell RNA-seq
56
snATAC-seq
48
WGBS
32
pCHi-C
18
Hi-C
10
RRBS
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
DNase-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
4
DNA accessibility
Date released
3
October, 2019
1
August, 2017
Available data
32
bam
32
bed narrowPeak
32
bigBed narrowPeak
32
bigWig
30
bed broadPeak
bigBed broadPeak
28
bed bed3+
2
fastq
Organism
4
Homo sapiens
Biosample type
3
primary cell
tissue
1
cell line
Organ
3
epithelium
3
kidney
Project
4
AMP
Genome assembly (visualization)
2
hg19
1
GRCh38
Lab
4
AMP-T2D consortium
biosample_type!
tissue
files.file_type!
bigBed broadPeak
txt
BIOSAMPLE
ASSAY
4 results
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DNase-seq
primary cell
kidney glomerular epithelial cell
1
kidney tubule cell
1
skeletal muscle myoblast
1
cell line
glomerular visceral epithelial cell
1
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