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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
ChIP-seq
3
Hi-C
3
single cell RNA-seq
1
RRBS
Assay category
3
3D chromatin structure
3
DNA binding
3
Transcription
1
DNA methylation
Target of assay
6
control
Date released
7
July, 2019
3
November, 2017
Available data
20
bigWig
17
bam
11
bed broadPeak
11
bed narrowPeak
bigBed broadPeak
11
bigBed narrowPeak
9
fastq
8
bed bed3+
3
hdf5
3
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
10
Homo sapiens
Biosample type
tissue
10
primary cell
Organ
455
epithelium
408
pancreas
368
liver
119
connective tissue
69
blood
69
bodily fluid
45
kidney
37
embryo
25
vasculature
23
blood vessel
18
vein
13
musculature of body
11
heart
10
brain
4
eye
3
adipose tissue
2
artery
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
10
AMP
Genome assembly (visualization)
10
hg19
3
GRCh38
Lab
10
AMP-T2D consortium
biosample_type!
tissue
files.file_type!
bigBed broadPeak
month_released!
February, 2021
BIOSAMPLE
ASSAY
10 results
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ChIP-seq
Hi-C
single cell RNA-seq
RRBS
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
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