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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
353
ChIP-seq
24
ATAC-seq
2
DNase-seq
1
FAIRE-seq
Assay category
353
DNA binding
27
DNA accessibility
Target of assay
295
transcription factor
81
recombinant protein
64
RNA binding protein
53
histone
53
histone modification
28
narrow histone mark
27
chromatin remodeller
25
broad histone mark
1
other context
1
other post-translational modification
Date released
197
November, 2017
56
November, 2018
27
December, 2018
23
June, 2019
20
October, 2019
15
January, 2019
14
December, 2017
14
September, 2018
5
August, 2017
5
September, 2017
4
May, 2019
Available data
1374
bigWig
1346
bam
880
fastq
833
bed narrowPeak
521
tsv
481
bigBed narrowPeak
153
zippedFastqFolder
144
tagAlign
109
bed broadPeak
bigBed broadPeak
62
bed bed3+
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
380
Homo sapiens
Biosample type
tissue
302
cell line
62
primary cell
16
in vitro differentiated cells
Organ
255
liver
56
epithelium
54
blood
54
bodily fluid
28
pancreas
11
blood vessel
11
connective tissue
11
vasculature
11
vein
8
musculature of body
7
kidney
3
heart
2
eye
Project
380
AMP
Genome assembly (visualization)
376
hg19
352
GRCh38
Lab
380
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
14
inconsistent control read length
9
inconsistent control run_type
1
inconsistent assembly
biosample_type!
tissue
files.file_type!
bigBed broadPeak
target.investigated_as!
control
BIOSAMPLE
ASSAY
380 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
cell line
HepG2
241
GM12878
54
Panc1
6
glomerular visceral epithelial cell
1
primary cell
endothelial cell of umbilical vein
10
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
mesenchymal stem cell
6
pancreatic alpha cell
6
+ See 9 more…
in vitro differentiated cells
hepatocyte
14
adipocyte
2
See all biosamples
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