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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
277
ChIP-seq
19
total RNA-seq
3
Hi-C
2
ATAC-seq
2
STARR-seq
2
pCHi-C
1
RRBS
1
WGBS
1
whole genome sequencing assay
Assay category
277
DNA binding
19
Transcription
3
3D chromatin structure
2
DNA accessibility
2
DNA methylation
1
DNA sequencing
Target of assay
255
transcription factor
82
recombinant protein
control
52
RNA binding protein
19
histone
19
histone modification
17
chromatin remodeller
10
narrow histone mark
9
broad histone mark
1
other context
1
other post-translational modification
Date released
201
November, 2017
46
November, 2018
30
August, 2021
14
December, 2017
5
December, 2019
5
January, 2019
2
February, 2021
2
July, 2019
1
December, 2018
1
May, 2020
1
October, 2019
Available data
344
bigWig
335
bam
328
bed narrowPeak
325
fastq
309
bigBed narrowPeak
60
bed broadPeak
bigBed broadPeak
20
tsv
14
tagAlign
7
bed bed3+
3
tar
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
hdf5
1
hic
1
vcf
Organism
308
Homo sapiens
Biosample type
tissue
283
cell line
14
in vitro differentiated cells
11
primary cell
Organ
457
epithelium
416
pancreas
308
liver
119
connective tissue
85
vasculature
84
blood vessel
73
heart
66
artery
63
blood
63
bodily fluid
39
kidney
30
embryo
16
vein
11
musculature of body
4
brain
3
adipose tissue
3
eye
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
308
AMP
Genome assembly (visualization)
284
hg19
247
GRCh38
Lab
281
AMP-T2D consortium
27
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
biosample_type!
tissue
files.file_type!
bigBed broadPeak
target.investigated_as!
control
BIOSAMPLE
ASSAY
308 results
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ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
STARR-seq
pCHi-C
RRBS
WGBS
whole genome sequencing assay
cell line
HepG2
260
14
2
1
2
2
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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