Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
85
single cell RNA-seq
56
snATAC-seq
47
WGBS
39
ATAC-seq
16
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
181
Transcription
95
DNA accessibility
47
DNA methylation
4
3D chromatin structure
Date released
134
May, 2022
81
February, 2023
56
September, 2020
45
February, 2021
16
May, 2021
8
January, 2021
5
March, 2023
3
October, 2022
Available data
bigWig
184
bam
169
fastq
153
zippedFastqFolder
104
tsv
86
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
344
Homo sapiens
Biosample type
339
primary cell
tissue
7
cell line
2
stem cell
Organ
142
epithelium
142
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
AMP
314
HPAP
29
T1D
4
community
1
ITG
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
314
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
4
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
1
inconsistent ontology term
biosample_type!
tissue
files.file_type!
bigWig
award.project!
AMP
BIOSAMPLE
ASSAY
348 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ATAC-seq
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
31
22
1
pancreatic beta cell
11
16
13
1
exocrine cell
39
peripheral blood mononuclear cell
8
+ See 17 more…
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
Download