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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
14
total RNA-seq
2
ATAC-seq
2
DNase-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
RRBS
1
whole genome sequencing assay
Assay category
22
DNA binding
14
Transcription
4
DNA accessibility
2
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
11
transcription factor
6
histone
6
histone modification
5
control
4
narrow histone mark
2
broad histone mark
1
RNA binding protein
Date released
35
August, 2021
5
December, 2019
2
February, 2021
2
July, 2019
2
June, 2019
1
May, 2020
1
October, 2019
Available data
393
bam
fastq
357
bigWig
328
bed narrowPeak
309
bigBed narrowPeak
60
bed broadPeak
60
bigBed broadPeak
20
tsv
16
tagAlign
7
bed bed3+
3
tar
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
hdf5
1
hic
1
vcf
Organism
48
Homo sapiens
Biosample type
tissue
34
cell line
14
primary cell
Organ
252
epithelium
183
pancreas
97
vasculature
94
blood vessel
80
heart
79
connective tissue
68
artery
55
kidney
48
liver
22
vein
14
musculature of body
12
brain
10
embryo
9
blood
9
bodily fluid
5
eye
2
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
48
AMP
Genome assembly (visualization)
30
hg19
12
GRCh38
Lab
31
Bing Ren, UCSD
17
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
biosample_type!
tissue
files.file_type!
fastq
BIOSAMPLE
ASSAY
48 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
STARR-seq
pCHi-C
RRBS
whole genome sequencing assay
cell line
HepG2
18
9
1
1
2
2
1
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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