Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
56
snATAC-seq
49
ATAC-seq
47
WGBS
16
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
Transcription
105
DNA accessibility
86
DNA binding
47
DNA methylation
4
3D chromatin structure
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
101
May, 2021
101
May, 2022
33
February, 2021
8
January, 2021
7
August, 2020
5
February, 2023
3
October, 2022
3
September, 2020
1
March, 2020
1
March, 2023
Available data
101
zippedFastqFolder
96
bigWig
86
bam
86
bed narrowPeak
84
tagAlign
43
fastq
6
tsv
4
hic
3
bedpe bed3+
3
cool
Organism
263
Homo sapiens
Biosample type
256
primary cell
tissue
7
cell line
Organ
101
epithelium
101
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
AMP
147
HPAP
115
T1D
1
ITG
Genome assembly (visualization)
97
GRCh38
89
hg19
Lab
147
Klaus Kaestner, Upenn
113
Kyle Gaulton, UCSD
2
AMP-T2D consortium
1
ITG
Audit category:
30
audit script error
3
inconsistent ontology term
biosample_type!
tissue
files.file_type!
ibed
award.project!
AMP
assay_slims!
Transcription
BIOSAMPLE
ASSAY
263 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
1
pancreatic alpha cell
29
31
1
Langerhans cell
48
pancreatic beta cell
16
16
1
peripheral blood mononuclear cell
8
+ See 16 more…
cell line
EndoC_BH1
2
3
2
See all biosamples
Download