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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
Assay category
134
DNA binding
Target of assay
112
histone
112
histone modification
57
broad histone mark
55
narrow histone mark
13
control
9
transcription factor
Date released
90
May, 2021
August, 2017
24
August, 2021
12
November, 2017
8
February, 2021
Available data
1373
bam
1303
bigWig
869
fastq
757
bed narrowPeak
524
tsv
461
bigBed narrowPeak
153
zippedFastqFolder
134
tagAlign
94
bed broadPeak
94
bigBed broadPeak
61
bed bed3+
13
bedpe bed3+
12
hic
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
ibed
1
vcf
Organism
134
Homo sapiens
Biosample type
tissue
88
primary cell
26
in vitro differentiated cells
20
cell line
Organ
16
liver
7
epithelium
6
artery
6
blood vessel
6
heart
6
vasculature
3
pancreas
Project
84
T1D
50
AMP
Genome assembly (visualization)
121
hg19
119
GRCh38
Lab
84
Kyle Gaulton, UCSD
50
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
11
inconsistent control read length
biosample_type!
tissue
files.file_type!
ibed
month_released!
August, 2017
BIOSAMPLE
ASSAY
134 results
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ChIP-seq
primary cell
monocyte
84
hepatocyte
4
in vitro differentiated cells
neural progenitor cell
20
cardiomyocytes
3
pancreatic PP cell
3
cell line
HepG2
12
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
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