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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
30
DNase-seq
Assay category
57
DNA binding
30
DNA accessibility
Target of assay
49
transcription factor
9
RNA binding protein
8
histone
8
histone modification
5
chromatin remodeller
4
broad histone mark
4
narrow histone mark
1
other context
1
other post-translational modification
Date released
53
November, 2017
24
June, 2019
5
October, 2019
4
August, 2017
1
November, 2020
Available data
1485
bam
1397
bigWig
981
fastq
833
bed narrowPeak
524
tsv
481
bigBed narrowPeak
tagAlign
153
zippedFastqFolder
109
bed broadPeak
109
bigBed broadPeak
68
bed bed3+
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
87
Homo sapiens
Biosample type
tissue
48
cell line
38
primary cell
1
in vitro differentiated cells
Organ
49
liver
22
epithelium
12
vasculature
11
brain
10
kidney
8
blood vessel
7
connective tissue
4
vein
3
heart
1
eye
1
musculature of body
1
pancreas
Project
87
AMP
Genome assembly (visualization)
80
hg19
71
GRCh38
Lab
87
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
2
inconsistent control read length
biosample_type!
tissue
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
87 results
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ChIP-seq
DNase-seq
cell line
HepG2
47
Panc1
1
primary cell
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
cardiac fibroblast
3
choroid plexus epithelial cell
2
1
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in vitro differentiated cells
adipocyte
1
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