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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
20
ChIP-seq
8
ATAC-seq
4
DNase-seq
4
Hi-C
1
FAIRE-seq
Assay category
54
Transcription
20
DNA binding
13
DNA accessibility
4
3D chromatin structure
Target of assay
16
histone
16
histone modification
9
broad histone mark
7
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
60
February, 2021
21
October, 2019
4
July, 2019
3
November, 2017
2
June, 2019
1
March, 2020
Available data
93
bam
80
bigWig
54
tsv
29
bed narrowPeak
17
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
tagAlign
3
fastq
2
hdf5
2
hic
1
bedpe bed3+
1
tar
Organism
91
Homo sapiens
Biosample type
tissue
60
cell line
31
primary cell
Organ
502
epithelium
438
pancreas
414
liver
123
connective tissue
97
vasculature
91
blood vessel
74
heart
69
blood
69
bodily fluid
62
artery
55
kidney
37
embryo
22
vein
21
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
91
AMP
Genome assembly (visualization)
85
hg19
78
GRCh38
Lab
91
AMP-T2D consortium
Audit category:
1
audit script error
biosample_type!
tissue
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
91 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
cell line
smooth muscle cell of the coronary artery
52
8
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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