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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
total RNA-seq
12
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
80
Transcription
12
DNA accessibility
Date released
324
November, 2017
224
May, 2021
134
May, 2022
127
August, 2017
102
May, 2020
98
February, 2023
66
August, 2021
64
October, 2019
63
February, 2021
62
November, 2018
59
September, 2020
55
June, 2019
47
September, 2018
46
December, 2017
28
December, 2018
24
February, 2018
20
November, 2019
18
January, 2019
13
July, 2019
8
January, 2021
8
November, 2020
7
August, 2020
7
March, 2020
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
October, 2022
1
August, 2018
Available data
76
fastq
tsv
5
bed bed3
4
bed bed3+
3
bed bedgraph
3
bigWig
3
txt
2
bed narrowPeak
Organism
97
Homo sapiens
Biosample type
tissue
76
primary cell
16
in vitro differentiated cells
6
cell line
Organ
38
epithelium
38
pancreas
13
connective tissue
Project
76
HPAP
17
AMP
5
T1D
Genome assembly (visualization)
12
hg19
Lab
76
Klaus Kaestner, Upenn
14
AMP-T2D consortium
5
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
5
inconsistent ontology term
biosample_type!
tissue
files.file_type!
tsv
BIOSAMPLE
ASSAY
98 results
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Clear Filters
total RNA-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR genome editing followed by sgRNA sequencing
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 2 more…
cell line
EndoC_BH1
3
2
1
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