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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
160
ChIP-seq
7
ATAC-seq
Assay category
160
DNA binding
7
DNA accessibility
Target of assay
135
histone
135
histone modification
71
broad histone mark
64
narrow histone mark
16
control
9
transcription factor
Date released
90
May, 2021
26
August, 2017
24
August, 2021
12
November, 2017
10
February, 2021
5
February, 2023
Available data
1485
bam
1397
bigWig
981
fastq
833
bed narrowPeak
524
tsv
481
bigBed narrowPeak
160
tagAlign
153
zippedFastqFolder
109
bed broadPeak
109
bigBed broadPeak
68
bed bed3+
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
167
Homo sapiens
Biosample type
tissue
101
primary cell
45
in vitro differentiated cells
21
cell line
Organ
20
connective tissue
17
liver
7
epithelium
6
artery
6
blood vessel
6
heart
6
vasculature
3
pancreas
Project
84
T1D
83
AMP
Genome assembly (visualization)
140
hg19
132
GRCh38
Lab
84
Kyle Gaulton, UCSD
83
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
inconsistent replicate
Audit category:
11
inconsistent control read length
1
inconsistent assembly
biosample_type!
tissue
BIOSAMPLE
ASSAY
167 results
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Clear Filters
ChIP-seq
ATAC-seq
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
4
osteoblast
1
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
chondrocyte
5
cardiomyocytes
3
pancreatic PP cell
3
cell line
HepG2
12
1
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
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