Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
324
ChIP-seq
2
ATAC-seq
2
DNase-seq
Assay category
324
DNA binding
4
DNA accessibility
Target of assay
290
transcription factor
81
recombinant protein
54
RNA binding protein
31
histone
31
histone modification
21
chromatin remodeller
16
broad histone mark
15
narrow histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
44
November, 2018
17
August, 2021
14
December, 2017
2
June, 2019
1
February, 2021
1
October, 2019
Available data
393
bam
382
fastq
357
bigWig
328
bed narrowPeak
309
bigBed narrowPeak
60
bed broadPeak
60
bigBed broadPeak
20
tsv
16
tagAlign
7
bed bed3+
3
tar
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
hdf5
1
hic
1
vcf
Organism
328
Homo sapiens
Biosample type
308
cell line
tissue
14
in vitro differentiated cells
6
primary cell
Organ
328
liver
139
epithelium
91
pancreas
62
connective tissue
54
blood
54
bodily fluid
33
vasculature
30
kidney
29
blood vessel
18
heart
14
embryo
13
vein
12
artery
11
brain
9
musculature of body
3
eye
Project
328
AMP
Genome assembly (visualization)
324
hg19
282
GRCh38
Lab
314
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
24
inconsistent control read length
8
inconsistent control run_type
biosample_type!
tissue
BIOSAMPLE
ASSAY
328 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
307
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
Download