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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
6
Hi-C
3
pCHi-C
2
DNase-seq
Assay category
58
DNA binding
6
3D chromatin structure
2
DNA accessibility
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
58
November, 2017
4
March, 2020
3
October, 2019
1
August, 2017
1
August, 2018
1
August, 2021
1
November, 2019
Available data
876
bam
784
bigWig
572
fastq
538
bed narrowPeak
372
bigBed narrowPeak
254
tsv
60
bed broadPeak
60
bigBed broadPeak
60
tagAlign
31
bed bed3+
9
bedpe bed3+
7
bed bedgraph
6
bed bed3
6
hic
4
txt
3
tar
2
ibed
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
vcf
Organism
69
Homo sapiens
Biosample type
tissue
61
cell line
primary cell
8
in vitro differentiated cells
Organ
59
liver
2
connective tissue
2
pancreas
1
adipose tissue
1
epithelium
Project
69
AMP
Genome assembly (visualization)
68
hg19
46
GRCh38
Lab
68
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
7
inconsistent ontology term
Audit category:
13
inconsistent control read length
biosample_type!
tissue
primary cell
BIOSAMPLE
ASSAY
69 results
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Clear Filters
ChIP-seq
Hi-C
pCHi-C
DNase-seq
cell line
HepG2
58
1
EndoC_BH1
1
Panc1
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
adipocyte
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
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