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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
29
DNase-seq
Assay category
79
DNA binding
29
DNA accessibility
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
64
November, 2017
24
June, 2019
14
August, 2017
5
October, 2019
1
November, 2020
Available data
1194
bam
1138
bigWig
840
fastq
701
bed narrowPeak
464
bigBed narrowPeak
393
tsv
153
zippedFastqFolder
120
tagAlign
108
bed broadPeak
108
bigBed broadPeak
43
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
8
hic
6
bedpe bed3+
5
hdf5
4
tar
3
cool
2
bed bed3
2
csv
1
txt
1
vcf
Organism
108
Homo sapiens
Biosample type
tissue
59
cell line
49
primary cell
in vitro differentiated cells
Organ
60
liver
22
epithelium
12
vasculature
11
brain
10
kidney
8
blood vessel
6
connective tissue
4
vein
3
heart
1
eye
1
musculature of body
1
pancreas
Project
108
AMP
Genome assembly (visualization)
101
hg19
90
GRCh38
Lab
108
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
biosample_type!
tissue
in vitro differentiated cells
BIOSAMPLE
ASSAY
108 results
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ChIP-seq
DNase-seq
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
13
1
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
cardiac fibroblast
3
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