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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
30
DNase-seq
21
snATAC-seq
Assay category
90
DNA accessibility
79
DNA binding
52
Transcription
41
DNA methylation
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
134
May, 2022
64
November, 2017
24
June, 2019
19
September, 2020
15
August, 2017
5
October, 2019
1
November, 2020
Available data
1485
bam
1397
bigWig
981
fastq
833
bed narrowPeak
524
tsv
481
bigBed narrowPeak
160
tagAlign
153
zippedFastqFolder
109
bed broadPeak
109
bigBed broadPeak
68
bed bed3+
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
262
Homo sapiens
Biosample type
202
primary cell
tissue
59
cell line
1
in vitro differentiated cells
Organ
102
epithelium
81
pancreas
60
liver
12
vasculature
11
brain
10
kidney
8
blood vessel
7
connective tissue
4
vein
3
heart
1
eye
1
musculature of body
Project
153
HPAP
109
AMP
Genome assembly (visualization)
102
hg19
91
GRCh38
Lab
153
Klaus Kaestner, Upenn
109
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
biosample_type!
tissue
BIOSAMPLE
ASSAY
262 results
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ChIP-seq
single cell RNA-seq
WGBS
ATAC-seq
DNase-seq
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
skeletal muscle myoblast
13
1
endothelial cell of umbilical vein
2
2
+ See 22 more…
cell line
HepG2
58
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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