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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
401
ChIP-seq
24
ATAC-seq
8
DNase-seq
1
FAIRE-seq
Assay category
401
DNA binding
33
DNA accessibility
Target of assay
336
transcription factor
81
recombinant protein
69
RNA binding protein
60
histone
60
histone modification
32
chromatin remodeller
30
broad histone mark
30
narrow histone mark
2
other context
2
other post-translational modification
Date released
255
November, 2017
56
November, 2018
June, 2019
27
December, 2018
23
October, 2019
20
August, 2017
15
January, 2019
14
December, 2017
14
September, 2018
5
September, 2017
4
May, 2019
1
November, 2020
Available data
1430
bam
1350
bigWig
981
fastq
786
bed narrowPeak
524
tsv
434
bigBed narrowPeak
160
tagAlign
153
zippedFastqFolder
85
bed broadPeak
85
bigBed broadPeak
44
bed bed3+
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
434
Homo sapiens
Biosample type
tissue
355
cell line
62
primary cell
17
in vitro differentiated cells
Organ
307
liver
58
epithelium
54
blood
54
bodily fluid
29
pancreas
17
vasculature
15
blood vessel
13
vein
6
brain
5
kidney
4
connective tissue
Project
434
AMP
Genome assembly (visualization)
430
hg19
396
GRCh38
Lab
434
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
biosample_type!
tissue
month_released!
June, 2019
BIOSAMPLE
ASSAY
434 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
cell line
HepG2
293
GM12878
54
Panc1
6
1
glomerular visceral epithelial cell
1
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
+ See 6 more…
in vitro differentiated cells
hepatocyte
14
adipocyte
2
1
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