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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
388
ChIP-seq
15
DNase-seq
2
ATAC-seq
Assay category
388
DNA binding
17
DNA accessibility
Target of assay
333
transcription factor
81
recombinant protein
66
RNA binding protein
50
histone
50
histone modification
31
chromatin remodeller
26
narrow histone mark
24
broad histone mark
2
other context
2
other post-translational modification
Date released
251
November, 2017
56
November, 2018
29
June, 2019
27
December, 2018
17
August, 2017
15
January, 2019
9
October, 2019
1
November, 2020
Available data
1168
bam
1096
bigWig
724
fastq
694
bed narrowPeak
405
bigBed narrowPeak
371
tsv
153
tagAlign
87
bed broadPeak
87
bigBed broadPeak
73
zippedFastqFolder
47
bed bed3+
8
bedpe bed3+
7
bed bed3
7
bed bedgraph
6
hic
5
bed bedMethyl
5
bigBed bedMethyl
4
txt
3
hdf5
3
tar
2
csv
2
ibed
1
vcf
Organism
405
Homo sapiens
Biosample type
tissue
354
cell line
48
primary cell
3
in vitro differentiated cells
Organ
309
liver
epithelium
54
blood
54
bodily fluid
29
pancreas
21
vasculature
18
connective tissue
17
blood vessel
17
kidney
13
vein
11
brain
9
musculature of body
6
heart
3
eye
Project
405
AMP
Genome assembly (visualization)
400
hg19
368
GRCh38
Lab
405
AMP-T2D consortium
Audit category:
18
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
biosample_type!
tissue
organ_slims!
epithelium
BIOSAMPLE
ASSAY
405 results
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ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
293
GM12878
54
Panc1
6
1
primary cell
skeletal muscle myoblast
14
2
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
mesenchymal stem cell
6
astrocyte of the cerebellum
2
1
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in vitro differentiated cells
adipocyte
1
2
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