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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
414
ChIP-seq
30
DNase-seq
24
ATAC-seq
Assay category
414
DNA binding
54
DNA accessibility
Target of assay
340
transcription factor
81
recombinant protein
73
RNA binding protein
69
histone
69
histone modification
36
narrow histone mark
33
broad histone mark
32
chromatin remodeller
2
other context
2
other post-translational modification
Date released
255
November, 2017
56
November, 2018
47
June, 2019
27
December, 2018
20
August, 2017
15
January, 2019
14
December, 2017
14
September, 2018
10
October, 2019
5
September, 2017
4
May, 2019
1
November, 2020
Available data
1465
bam
1382
bigWig
981
fastq
820
bed narrowPeak
524
tsv
468
bigBed narrowPeak
160
tagAlign
153
zippedFastqFolder
105
bed broadPeak
105
bigBed broadPeak
66
bed bed3+
12
bedpe bed3+
11
bed bedMethyl
11
bigBed bedMethyl
10
hic
7
bed bed3
7
bed bedgraph
5
hdf5
4
txt
3
cool
3
tar
2
csv
2
ibed
1
vcf
Organism
468
Homo sapiens
Biosample type
tissue
355
cell line
96
primary cell
17
in vitro differentiated cells
Organ
309
liver
76
epithelium
54
blood
54
bodily fluid
29
pancreas
21
vasculature
18
connective tissue
17
blood vessel
17
kidney
vein
11
brain
9
musculature of body
6
heart
3
eye
Project
468
AMP
Genome assembly (visualization)
457
hg19
431
GRCh38
Lab
468
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
biosample_type!
tissue
organ_slims!
vein
BIOSAMPLE
ASSAY
468 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
293
GM12878
54
Panc1
6
1
glomerular visceral epithelial cell
1
primary cell
skeletal muscle myoblast
14
2
pancreatic beta cell
7
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
mesenchymal stem cell
6
+ See 23 more…
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
See all biosamples
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