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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
351
ChIP-seq
32
DNase-seq
24
ATAC-seq
1
FAIRE-seq
Assay category
351
DNA binding
57
DNA accessibility
Target of assay
340
transcription factor
81
recombinant protein
79
histone
79
histone modification
RNA binding protein
41
narrow histone mark
38
broad histone mark
32
chromatin remodeller
2
other context
2
other post-translational modification
Date released
220
November, 2017
43
June, 2019
35
November, 2018
25
December, 2018
23
October, 2019
18
August, 2017
14
September, 2018
12
December, 2017
9
January, 2019
5
September, 2017
3
May, 2019
1
November, 2020
Available data
1405
bam
1318
bigWig
907
fastq
754
bed narrowPeak
524
tsv
408
bigBed narrowPeak
160
tagAlign
153
zippedFastqFolder
100
bed broadPeak
100
bigBed broadPeak
68
bed bed3+
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
txt
3
cool
3
tar
2
csv
2
ibed
1
vcf
Organism
408
Homo sapiens
Biosample type
tissue
294
cell line
99
primary cell
15
in vitro differentiated cells
Organ
256
liver
69
epithelium
44
blood
44
bodily fluid
29
pancreas
19
vasculature
17
connective tissue
16
blood vessel
15
kidney
13
vein
9
musculature of body
8
brain
5
heart
2
eye
Project
408
AMP
Genome assembly (visualization)
398
hg19
375
GRCh38
Lab
408
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
1
inconsistent control
Audit category:
10
missing controlled_by
Audit category:
19
inconsistent control read length
6
inconsistent control run_type
2
inconsistent assembly
biosample_type!
tissue
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
408 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
cell line
HepG2
242
GM12878
44
Panc1
6
1
glomerular visceral epithelial cell
1
primary cell
skeletal muscle myoblast
12
2
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
mesenchymal stem cell
6
+ See 24 more…
in vitro differentiated cells
hepatocyte
12
adipocyte
1
2
See all biosamples
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