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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
32
DNase-seq
24
ATAC-seq
1
FAIRE-seq
Assay category
84
DNA binding
57
DNA accessibility
Target of assay
transcription factor
81
recombinant protein
79
histone
79
histone modification
73
RNA binding protein
41
narrow histone mark
38
broad histone mark
32
chromatin remodeller
2
other context
2
other post-translational modification
Date released
43
June, 2019
23
October, 2019
19
November, 2017
18
August, 2017
14
September, 2018
12
December, 2017
5
September, 2017
3
May, 2019
2
December, 2018
1
January, 2019
1
November, 2020
Available data
1089
bam
994
bigWig
606
fastq
524
tsv
439
bed narrowPeak
153
zippedFastqFolder
151
tagAlign
141
bigBed narrowPeak
62
bed bed3+
60
bed broadPeak
60
bigBed broadPeak
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
txt
3
cool
2
csv
2
ibed
1
tar
1
vcf
Organism
141
Homo sapiens
Biosample type
tissue
99
primary cell
27
cell line
15
in vitro differentiated cells
Organ
69
epithelium
30
liver
29
pancreas
19
vasculature
17
connective tissue
16
blood vessel
15
kidney
13
vein
9
musculature of body
8
brain
5
heart
3
blood
3
bodily fluid
2
eye
Project
141
AMP
Genome assembly (visualization)
136
GRCh38
134
hg19
Lab
141
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
10
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
biosample_type!
tissue
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
141 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
primary cell
skeletal muscle myoblast
12
2
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
mesenchymal stem cell
6
+ See 24 more…
cell line
HepG2
16
Panc1
6
1
GM12878
3
glomerular visceral epithelial cell
1
in vitro differentiated cells
hepatocyte
12
adipocyte
1
2
See all biosamples
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