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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
543
ChIP-seq
20
total RNA-seq
5
GRO-seq
1
DNase-seq
1
Hi-C
1
WGBS
1
pCHi-C
Assay category
543
DNA binding
20
Transcription
1
3D chromatin structure
1
DNA accessibility
1
DNA methylation
Target of assay
370
transcription factor
85
control
83
histone
83
histone modification
82
recombinant protein
69
RNA binding protein
42
narrow histone mark
40
broad histone mark
33
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
61
November, 2018
54
August, 2017
46
December, 2017
39
February, 2018
28
December, 2018
23
January, 2019
5
January, 2018
1
August, 2018
Available data
876
bam
784
bigWig
572
fastq
538
bed narrowPeak
372
bigBed narrowPeak
254
tsv
60
bed broadPeak
60
bigBed broadPeak
60
tagAlign
31
bed bed3+
9
bedpe bed3+
7
bed bedgraph
6
bed bed3
6
hic
4
txt
3
tar
2
ibed
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
vcf
Organism
572
Homo sapiens
Biosample type
427
cell line
primary cell
tissue
141
in vitro differentiated cells
4
stem cell
Organ
382
liver
60
blood
60
bodily fluid
55
connective tissue
27
embryo
19
epithelium
1
adipose tissue
Project
572
AMP
Genome assembly (visualization)
488
hg19
442
GRCh38
5
hg18
Lab
572
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
inconsistent control
Audit category:
19
missing controlled_by
Audit category:
45
inconsistent control read length
8
inconsistent control run_type
biosample_type!
tissue
primary cell
BIOSAMPLE
ASSAY
572 results
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ChIP-seq
total RNA-seq
GRO-seq
DNase-seq
Hi-C
WGBS
pCHi-C
cell line
HepG2
360
5
1
1
GM12878
60
in vitro differentiated cells
adipocyte
53
1
pancreatic endoderm
18
4
1
hepatocyte
15
definitive endodermal cell
8
2
1
primitive gut cell
8
2
1
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stem cell
hESC
3
1
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