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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
591
ChIP-seq
20
total RNA-seq
5
GRO-seq
1
DNase-seq
1
Hi-C
1
WGBS
1
pCHi-C
Assay category
591
DNA binding
20
Transcription
1
3D chromatin structure
1
DNA accessibility
1
DNA methylation
Target of assay
379
transcription factor
109
histone
109
histone modification
98
control
82
recombinant protein
69
RNA binding protein
54
broad histone mark
54
narrow histone mark
33
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
68
August, 2017
61
November, 2018
46
December, 2017
39
February, 2018
28
December, 2018
23
January, 2019
20
August, 2021
8
February, 2021
6
May, 2021
5
January, 2018
1
August, 2018
Available data
876
bam
784
bigWig
572
fastq
538
bed narrowPeak
372
bigBed narrowPeak
254
tsv
60
bed broadPeak
60
bigBed broadPeak
60
tagAlign
31
bed bed3+
9
bedpe bed3+
7
bed bedgraph
6
bed bed3
6
hic
4
txt
3
tar
2
ibed
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
vcf
Organism
620
Homo sapiens
Biosample type
tissue
primary cell
435
cell line
181
in vitro differentiated cells
4
stem cell
Organ
382
liver
69
connective tissue
60
blood
60
bodily fluid
27
embryo
22
epithelium
6
artery
6
blood vessel
6
heart
6
vasculature
3
pancreas
1
adipose tissue
Project
620
AMP
Genome assembly (visualization)
510
hg19
465
GRCh38
5
hg18
Lab
620
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
1
inconsistent control
Audit category:
19
missing controlled_by
Audit category:
45
inconsistent control read length
8
inconsistent control run_type
biosample_type!
tissue
primary cell
BIOSAMPLE
ASSAY
620 results
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ChIP-seq
total RNA-seq
GRO-seq
DNase-seq
Hi-C
WGBS
pCHi-C
cell line
HepG2
360
5
1
1
GM12878
60
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
in vitro differentiated cells
adipocyte
67
1
pancreatic endoderm
18
4
1
neural progenitor cell
20
hepatocyte
15
definitive endodermal cell
8
2
1
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stem cell
hESC
3
1
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