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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
Hi-C
Assay category
10
3D chromatin structure
Date released
3
October, 2022
2
March, 2020
2
October, 2019
1
August, 2021
1
March, 2023
1
November, 2019
Available data
1465
bam
1382
bigWig
981
fastq
820
bed narrowPeak
524
tsv
468
bigBed narrowPeak
160
tagAlign
153
zippedFastqFolder
105
bed broadPeak
105
bigBed broadPeak
66
bed bed3+
12
bedpe bed3+
11
bed bedMethyl
11
bigBed bedMethyl
10
hic
7
bed bed3
7
bed bedgraph
5
hdf5
4
txt
3
cool
3
tar
2
csv
2
ibed
1
vcf
Organism
10
Homo sapiens
Biosample type
tissue
4
in vitro differentiated cells
4
primary cell
2
cell line
Organ
6
epithelium
4
pancreas
2
blood vessel
2
vasculature
vein
1
liver
Project
6
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
9
hg19
1
GRCh38
Lab
5
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
ITG
Audit category:
5
inconsistent ontology term
3
audit script error
biosample_type!
tissue
organ_slims!
vein
BIOSAMPLE
ASSAY
10 results
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Hi-C
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
primary cell
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
HepG2
1
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