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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
58
total RNA-seq
16
pCHi-C
5
ATAC-seq
Assay category
154
DNA binding
58
Transcription
5
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
233
May, 2021
134
May, 2022
84
February, 2023
59
September, 2020
45
February, 2021
45
May, 2020
38
August, 2021
8
January, 2021
7
August, 2020
6
November, 2020
5
March, 2023
3
October, 2022
Available data
175
bigWig
135
bam
114
bed narrowPeak
84
tagAlign
51
tsv
2
bed bed3+
Organism
233
Homo sapiens
Biosample type
186
primary cell
47
in vitro differentiated cells
tissue
Organ
1
bone element
1
bone marrow
1
connective tissue
Project
151
T1D
82
AMP
Genome assembly (visualization)
175
hg19
135
GRCh38
Lab
233
Kyle Gaulton, UCSD
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
biosample_type!
tissue
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
233 results
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ChIP-seq
total RNA-seq
pCHi-C
ATAC-seq
primary cell
monocyte
84
51
1
CD8-positive, alpha-beta T cell
33
2
1
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
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in vitro differentiated cells
embryonic stem cell
37
5
5
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