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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
964
ChIP-seq
404
total RNA-seq
222
ATAC-seq
104
single cell RNA-seq
34
DNase-seq
32
pCHi-C
15
Hi-C
10
RRBS
8
snATAC-seq
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
104
Transcription
Target of assay
3
control
Date released
48
July, 2018
43
April, 2018
3
August, 2018
3
July, 2019
3
June, 2018
2
December, 2019
1
November, 2018
1
September, 2018
Available data
102
tsv
100
bam
100
bigWig
94
fastq
2
csv
Organism
104
Homo sapiens
Biosample type
tissue
102
primary cell
2
in vitro differentiated cells
Organ
74
pancreas
70
epithelium
4
connective tissue
3
brain
Project
104
AMP
Genome assembly (visualization)
100
GRCh38
100
hg19
Lab
104
AMP-T2D consortium
Klaus Kaestner, Upenn
Audit category:
9
inconsistent ontology term
2
audit script error
biosample_type!
tissue
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
104 results
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single cell RNA-seq
primary cell
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
pancreatic ductal cell
10
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in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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