Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
ChIP-seq
74
single cell RNA-seq
61
total RNA-seq
41
ATAC-seq
6
MeRIP-seq
2
Capture-C
2
Hi-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
Assay category
135
Transcription
101
DNA binding
42
DNA accessibility
2
3D chromatin structure
Target of assay
78
histone
78
histone modification
41
narrow histone mark
37
broad histone mark
24
control
3
nucleotide modification
2
transcription factor
1
RNA binding protein
Date released
72
September, 2018
41
August, 2017
37
July, 2018
33
April, 2018
26
February, 2021
24
May, 2021
16
November, 2019
15
October, 2019
6
November, 2020
5
March, 2020
5
September, 2017
3
August, 2018
2
August, 2021
2
October, 2018
1
February, 2023
1
June, 2018
Available data
260
bam
240
bigWig
189
fastq
136
tsv
91
bed narrowPeak
29
bigBed narrowPeak
3
tagAlign
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
Organism
288
Homo sapiens
Biosample type
tissue
194
primary cell
92
cell line
3
in vitro differentiated cells
Organ
430
liver
357
epithelium
289
pancreas
137
connective tissue
103
vasculature
97
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
55
kidney
37
embryo
22
vein
21
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
285
AMP
4
T1D
Genome assembly (visualization)
242
hg19
239
GRCh38
Lab
283
AMP-T2D consortium
Klaus Kaestner, Upenn
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
81
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
biosample_type!
tissue
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
289 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
MeRIP-seq
Capture-C
Hi-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
primary cell
pancreatic beta cell
13
12
10
7
pancreatic alpha cell
13
12
10
6
pancreatic ductal cell
13
10
4
4
pancreatic acinar cell
8
12
4
5
pancreatic endocrine cell
23
+ See 5 more…
cell line
EndoC_BH1
15
33
19
6
2
1
1
Panc1
13
1
1
in vitro differentiated cells
pancreatic PP cell
3
See all biosamples
Download