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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ChIP-seq
Assay category
76
DNA binding
Target of assay
51
histone
51
histone modification
27
broad histone mark
24
narrow histone mark
16
control
9
transcription factor
Date released
26
August, 2017
24
August, 2021
12
November, 2017
8
February, 2021
6
May, 2021
Available data
1305
bam
1177
bigWig
981
fastq
719
bed narrowPeak
481
bigBed narrowPeak
428
tsv
153
zippedFastqFolder
109
bed broadPeak
109
bigBed broadPeak
76
tagAlign
66
bed bed3+
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
76
Homo sapiens
Biosample type
tissue
40
in vitro differentiated cells
20
cell line
16
primary cell
Organ
16
liver
14
connective tissue
7
epithelium
6
artery
6
blood vessel
6
heart
6
vasculature
3
pancreas
Project
76
AMP
Genome assembly (visualization)
49
hg19
46
GRCh38
Lab
Kyle Gaulton, UCSD
76
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
11
inconsistent control read length
1
inconsistent assembly
biosample_type!
tissue
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
76 results
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ChIP-seq
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
cell line
HepG2
12
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
primary cell
skeletal muscle myoblast
12
hepatocyte
4
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