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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
ChIP-seq
112
total RNA-seq
16
pCHi-C
8
snATAC-seq
5
ATAC-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
Hi-C
1
whole genome sequencing assay
Assay category
172
DNA binding
112
Transcription
13
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
137
histone
137
histone modification
75
broad histone mark
62
narrow histone mark
23
transcription factor
12
control
6
RNA binding protein
Date released
233
May, 2021
45
May, 2020
34
August, 2021
8
January, 2021
5
February, 2023
Available data
234
bigWig
180
bam
128
bed narrowPeak
105
tsv
84
tagAlign
2
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
325
Homo sapiens
Biosample type
239
primary cell
tissue
47
in vitro differentiated cells
39
cell line
Organ
31
liver
8
blood
8
bodily fluid
2
kidney
1
bone element
1
bone marrow
1
connective tissue
Project
209
T1D
116
AMP
Genome assembly (visualization)
235
hg19
180
GRCh38
Lab
1487
AMP-T2D consortium
324
Klaus Kaestner, Upenn
291
Kyle Gaulton, UCSD
34
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
6
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
1
ITG
Audit category:
6
inconsistent ontology term
biosample_type!
tissue
BIOSAMPLE
ASSAY
325 results
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Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
snATAC-seq
ATAC-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
Hi-C
whole genome sequencing assay
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
in vitro differentiated cells
embryonic stem cell
37
5
5
cell line
HepG2
18
9
2
1
1
EndoC_BH1
3
2
HEK293T
2
Synthesized DNA
1
See all biosamples
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