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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
9
total RNA-seq
5
STARR-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
17
DNA binding
9
Transcription
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
RNA binding protein
1
broad histone mark
Date released
33
August, 2021
Available data
13
bed narrowPeak
13
bigWig
9
tsv
1
bedpe bed3+
1
hic
1
vcf
Organism
33
Homo sapiens
Biosample type
33
cell line
tissue
Organ
30
liver
2
kidney
Project
33
AMP
Genome assembly (visualization)
14
hg19
Lab
1407
AMP-T2D consortium
324
Klaus Kaestner, Upenn
286
Kyle Gaulton, UCSD
33
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
6
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
1
ITG
Audit category:
1
inconsistent ontology term
biosample_type!
tissue
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
total RNA-seq
STARR-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
17
9
2
1
1
HEK293T
2
Synthesized DNA
1
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