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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
total RNA-seq
80
ChIP-seq
16
pCHi-C
8
snATAC-seq
5
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
103
Transcription
80
DNA binding
13
DNA accessibility
Target of assay
134
histone
134
histone modification
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
159
May, 2021
45
May, 2020
8
January, 2021
5
February, 2023
Available data
156
bigWig
136
bam
96
tsv
50
bed narrowPeak
40
tagAlign
2
bed bed3+
Organism
217
Homo sapiens
Biosample type
175
primary cell
tissue
37
in vitro differentiated cells
5
cell line
Organ
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
165
T1D
52
AMP
Genome assembly (visualization)
156
hg19
136
GRCh38
Lab
1364
AMP-T2D consortium
324
Klaus Kaestner, Upenn
217
Kyle Gaulton, UCSD
33
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
6
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
1
ITG
Audit category:
5
inconsistent ontology term
biosample_type!
tissue
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
217 results
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total RNA-seq
ChIP-seq
pCHi-C
snATAC-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
40
1
CD8-positive, alpha-beta T cell
4
13
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
in vitro differentiated cells
embryonic stem cell
5
27
5
cell line
EndoC_BH1
3
2
See all biosamples
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