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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
16
pCHi-C
8
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
ChIP-seq
2
HiChIP
Assay category
98
Transcription
8
DNA accessibility
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
68
May, 2021
45
May, 2020
8
January, 2021
5
February, 2023
3
March, 2020
Available data
184
bam
184
bigWig
98
tsv
86
bed narrowPeak
tagAlign
Organism
129
Homo sapiens
Biosample type
120
primary cell
tissue
9
cell line
Organ
8
blood
8
bodily fluid
4
epithelium
4
pancreas
1
bone element
1
bone marrow
1
connective tissue
Project
1493
AMP
324
HPAP
129
T1D
4
community
1
ITG
Genome assembly (visualization)
100
GRCh38
100
hg19
Lab
125
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
biosample_type!
tissue
month_released!
April, 2018
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
129 results
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total RNA-seq
pCHi-C
snATAC-seq
CRISPR genome editing followed by DNA sequencing
ChIP-seq
HiChIP
primary cell
monocyte
53
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
+ See 31 more…
cell line
EndoC_BH1
2
3
2
2
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